BloodGen3Module - This R package for performing module repertoire analyses and
generating fingerprint representations
The BloodGen3Module package provides functions for R user
performing module repertoire analyses and generating
fingerprint representations. Functions can perform group
comparison or individual sample analysis and visualization by
fingerprint grid plot or fingerprint heatmap. Module repertoire
analyses typically involve determining the percentage of the
constitutive genes for each module that are significantly
increased or decreased. As we describe in
details;https://www.biorxiv.org/content/10.1101/525709v2 and
https://pubmed.ncbi.nlm.nih.gov/33624743/, the results of
module repertoire analyses can be represented in a fingerprint
format, where red and blue spots indicate increases or
decreases in module activity. These spots are subsequently
represented either on a grid, with each position being assigned
to a given module, or in a heatmap where the samples are
arranged in columns and the modules in rows.